iden Namespace Reference

Name space for all of the particle identification code. More...

Classes
class	Filestreams
class	Iden
	Class to encapsulate all of the image processing for particle identification. More...
class	Image2D
class	Image_base
	This is an ABC for different file layouts, ie to make dealing with multi-part files and the spew that comes out of stream to disk easy to change between. More...
class	Image_series
class	Image_stack
class	Tophat_Kernel
class	Gaussian_Kernel
class	Dilation_Kernel
class	Convolution_Kernel
class	MD_parser
	A base class for parsers that extract meta data from image files. More...
class	MD_parser_dummy
	A class that returns an empty Md_store object as a stand in for a proper parser. More...
class	Mm_md_parser
	A class for parsing and extracting the meta data from the tiff directories of tif files generated by metamorph. More...
class	Wrapper_i_plu
	Wrapper class for dealing with data from Peter Lu's code. More...

Typedefs
typedef enum iden::PIX_TYPE	PIX_TYPE
	Enumeration of pixel sizes. More...
typedef enum iden::MD_TYPE	MD_TYPE
	Enumeration of Meta data format types. More...

Enumerations
enum	PIX_TYPE {   U16 =0, U8, S16, F32,   ERROR }
	Enumeration of pixel sizes. More...
enum	MD_TYPE { NONE =0, MM }
	Enumeration of Meta data format types. More...

Functions
IppStatus	BandPass_2D (Image2D &image_in, Image2D &image_bpass, const int feature_radius, const float hwhm_length)
void	RecenterImage (Image2D &image)
IppStatus	FindLocalMax_2D (Image2D &image_bpass, Image2D &image_bpass_thresh, Image2D &image_subtracted, const float threshold, const int dilation_radius)
void	PrintParticleDataHeader (std::ostream &out)
void	PrintParticleData (std::ostream &out, const Ipp32f particledata[][9], const int startrow, const int endrow, const int framenumber, const int stacknumber)
Ipp32f(*	ParticleStatistics (Image2D &image_localmax, Image2D &image_in, const int mask_radius, const int feature_radius, int &counter))[9]
std::string	format_name (const std::string &dirname, const std::string &basename, int padding, unsigned int plane)
void	Print2DKernel8u (const int diameter, const Ipp8u *kernel)
void	Print2DKernel32f (const int diameter, const Ipp32f *kernel)

Detailed Description

Name space for all of the particle identification code.

Typedef Documentation

typedef enum iden::MD_TYPE iden::MD_TYPE

Enumeration of Meta data format types.

typedef enum iden::PIX_TYPE iden::PIX_TYPE

Enumeration of pixel sizes.

Enumeration Type Documentation

enum iden::MD_TYPE

Enumeration of Meta data format types.

Enumerator
NONE
MM

enum iden::PIX_TYPE

Enumeration of pixel sizes.

Enumerator
U16
U8
S16
F32
ERROR

Function Documentation

IppStatus iden::BandPass_2D	(	Image2D &	image_in,
		Image2D &	image_bpass,
		const int	feature_radius,
		const float	hwhm_length
	)

References iden::Image2D::get_height(), iden::Image2D::get_image2D(), iden::Image2D::get_stepsize(), and iden::Image2D::get_width().

Referenced by iden::Iden::fill_wrapper(), iden::Iden::fill_wrapper_avg(), and iden::Iden::process_frame().

IppStatus iden::FindLocalMax_2D	(	Image2D &	image_bpass,
		Image2D &	image_bpass_thresh,
		Image2D &	image_subtracted,
		const float	threshold,
		const int	dilation_radius
	)

References epsilon, iden::Image2D::get_height(), iden::Image2D::get_image2D(), iden::Image2D::get_ROIfull(), iden::Image2D::get_stepsize(), iden::Image2D::get_width(), and RecenterImage().

Referenced by iden::Iden::fill_wrapper(), iden::Iden::fill_wrapper_avg(), and iden::Iden::process_frame().

std::string iden::format_name	(	const std::string &	dirname,
		const std::string &	basename,
		int	padding,
		unsigned int	plane
	)

Referenced by iden::Image_series::select_plane().

Ipp32f(* iden::ParticleStatistics	(	Image2D &	image_localmax,
		Image2D &	image_in,
		const int	mask_radius,
		const int	feature_radius,
		int &	counter
	)		)[9]

Referenced by iden::Iden::fill_wrapper(), iden::Iden::fill_wrapper_avg(), and iden::Iden::process_frame().

void iden::Print2DKernel32f	(	const int	diameter,
		const Ipp32f *	kernel
	)

void iden::Print2DKernel8u	(	const int	diameter,
		const Ipp8u *	kernel
	)

void iden::PrintParticleData	(	std::ostream &	out,
		const Ipp32f	particledata[][9],
		const int	startrow,
		const int	endrow,
		const int	framenumber,
		const int	stacknumber
	)

void iden::PrintParticleDataHeader

(

std::ostream &

out)

void iden::RecenterImage

(

Image2D &

image)

References iden::Image2D::get_image2D(), iden::Image2D::get_ROIfull(), and iden::Image2D::get_stepsize().

Referenced by iden::Iden::fill_wrapper(), iden::Iden::fill_wrapper_avg(), FindLocalMax_2D(), and iden::Iden::process_frame().