Here are the classes, structs, unions and interfaces with brief descriptions:
[detail level 123]
  gnuplot | |
| H5 | |
 iden | Name space for all of the particle identification code |
  Filestreams | |
| Iden | Class to encapsulate all of the image processing for particle identification |
| Image2D | |
| Image_base | This is an ABC for different file layouts, ie to make dealing with multi-part files and the spew that comes out of stream to disk easy to change between |
| Image_series | |
| Image_stack | |
| Tophat_Kernel | |
| Gaussian_Kernel | |
| Dilation_Kernel | |
| Convolution_Kernel | |
| MD_parser | A base class for parsers that extract meta data from image files |
| MD_parser_dummy | A class that returns an empty Md_store object as a stand in for a proper parser |
| Mm_md_parser | A class for parsing and extracting the meta data from the tiff directories of tif files generated by metamorph |
 Wrapper_i_plu | Wrapper class for dealing with data from Peter Lu's code |
| tracking | Name space for all of the tracking code |
| Accum_chi4_self | Computes the self part of the susceptibility |
| Accum_sofq | S(|q|) computation |
| Accum_sofq_ND | Computes  |
| Accumulator | An ABC of objects that accumulate information from particles |
| Corr | A mostly ABC of objects that can be handed into hash_case and calculates correlation functions |
| Dummy_corr | A subclass of Corr that does nothing |
| Corr_case | A class to hold a stack of Corr objects for handing into a hash_case |
| Corr_gofr | Simple g(r) computation |
| Corr_goftheta | Simple  computation |
| Corr_pair_diffusion | Computes the motion of a pair of particles in relation to each other |
| Corr_theta_2pt | Computes the distribution made by the angles between pairs of particles to vertical for pairs in the given separation range |
| hash_box | Class for storing particles in the hash table |
| hash_case | Class to hold sets of Hash_shelf |
| Hash_shelf | Class to implement the hash table |
| Master_box | Class to hold the master list of all particles to be processed by the code |
| particle_base | Base class for particles |
| particle_track | Class for particles that are aware of tracking |
| TA_disp | Track accumulator that computes the distribution of  and  for displacements |
| TA_msd | Track accumulator that implements computation of the mean squared displacement |
| TA_theta_rlim | Track accumulator that computes the distribution of displacement direction for displacements with in the given range of displacement magnitudes |
| TA_vanHove | Track accumulator that implements computation of van Hove functions |
| Trk_accumulator | An abstract base class for track accumulator computations |
| Track_box | Box class for dealing with tracks |
| track_list | List wrapper class for us in the track linking portion of the code |
| Track_shelf | Top level class for holding the track boxes |
| wrapper_i_ning | Wrapper class for dealing with data from a text file |
| wrapper_i_ning_hd | Wrapper class for dealing with data from a text file |
| utilities | Namespace for utilities and helper functions |
| Accum_case | A class to hold a stack of accum objects for handing into a hash_case |
| Attr_list_hdf | Wraps the attribute functionality of hdf objects |
| CL_parse | A class to wrap the parsing of the command line to extract the input file, output file and parameter file |
| Counted_vector | A class for computing many averages in parallel |
| Data_map | Class to handle translation from D_TYPE to column position for flat data structures |
| Data_store | A struct to hold the data_map and raw data for input and output wrappers |
| Ll_range_error | Exception class derived from the standard range_error class to indicate when a linked list has stepped over it's range |
| Null_field | Exception to report when a function that should return valid pointer from an object, but the field is NULL in the object |
| Filter | ABC for filter objects |
| Filter_trivial | Trivial filter class that does nothing |
| Filter_ers | A basic filter, does rg (top), shift (top) and eccentricity (top) cuts |
| Filter_ersI | A basic filter, does rg (top), shift (top), eccentricity (top), and I (bottom) cuts |
| Generic_wrapper | An interface for extracting data from the internal data structures |
| Generic_wrapper_read | Abstract base class to provide an interface for reading data out of Generic_wrapper objects |
| Generic_wrapper_hdf | Generic_wrapper for writing to hdf files |
| Histogram | Base class for historgram objects |
| Histogram2D | Implements a 2D histogram |
| Md_store | A class to hold meta data |
| Md_element | A struct to store meta data information, (key,type,val) as strings to make passing this stuff around easy |
| ND_Array | A N-D array |
| Read_config | Class for reading configuration from xml files |
| SQL_handler | Class to wrap around the sqlite3 interface to deal with making connections to data basese, cleaning up after them etc |
| Tuple | Class for carrying around the posistion and velocity vectors |
| Wrapper_in | A mostly abstract base class for input wrappers |
| Wrapper_i_dummy | Wrapper class for testing purposes |
| Wrapper_i_file | Wrapper class for dealing with data from a text file |
| Wrapper_i_generic | Wrapper class for eating data from arbitrary sources |
| Wrapper_i_hdf | Wrapper class for eating data from hdf files, take 2 |
| Wrapper_i_jb_binary | Wrapper class for dealing with data from Justin's simulations |
| Wrapper_out | ABC for output wrappers |
| wrapper_o_file | Wrapper_o class for dealing with writing data to a file |
| Wrapper_o_hdf | Wrapper class for dealing with output to matlab |
 Wrapper_o_hdf_group | Wrapper class for dealing with output to matlab |
 complex_t | Struct to deal with shoving complex data in to hdf |
| wrapper_i_base |
