data_proc1.h

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//Peter J. Lu
//Copyright 2008 Peter J. Lu. 
//http://www.peterlu.org
//plu@fas.harvard.edu
//
//This program is free software; you can redistribute it and/or modify
//it under the terms of the GNU General Public License as published by
//the Free Software Foundation; either version 3 of the License, or (at
//your option) any later version.
//
//This program is distributed in the hope that it will be useful, but
//WITHOUT ANY WARRANTY; without even the implied warranty of
//MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
//General Public License for more details.
//
//You should have received a copy of the GNU General Public License
//along with this program; if not, see <http://www.gnu.org/licenses>.
//
//Additional permission under GNU GPL version 3 section 7
//
//If you modify this Program, or any covered work, by linking or
//combining it with MATLAB (or a modified version of that library),
//containing parts covered by the terms of MATLAB User License, the
//licensors of this Program grant you additional permission to convey
//the resulting work. 
//
//If you modify this Program, or any covered work, by linking or
//combining it with FreeImage (or a modified version of that library),
//containing parts covered by the terms of freeimage-license, the
//licensors of this Program grant you additional permission to convey
//the resulting work.  Corresponding Source for a non-source form of
//such a combination shall include the source code for the parts of
//FreeImage used as well as that of the covered work.
// 
//If you modify this Program, or any covered work, by linking or
//combining it with IPP (or a modified version of that library),
//containing parts covered by the terms of End User License Agreement
//for the Intel(R) Software Development Products, the licensors of
//this Program grant you additional permission to convey the resulting
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//copied form https://plutarc.svn.sourceforge.net/svnroot/plutarc/trunk/matlab_wrapper rev9
// Modified by Thomas Caswell tcaswell@uchicago.edu 09/2009-
#ifndef DATAPROC1_H
#define DATAPROC1_H

#include "image1.h"
/*//#include <iostream.h>*/
#include <fstream>
namespace iden
{

/*//This file contains all of the routines for data and image analysis*/

// tac 2009-09-15
// 
IppStatus BandPass_2D(Image2D &image_in, Image2D &image_bpass, const int feature_radius, const float hwhm_length);

void RecenterImage(Image2D &image);

IppStatus FindLocalMax_2D(Image2D &image_bpass, Image2D &image_bpass_thresh, Image2D &image_subtracted,
                                                  const float threshold, const int dilation_radius);

/*IppStatus PrintOutputImages(const Image2D &image_in, const Image2D &image_bpass, const Image2D &image_localmax,
  const Params &Parameters, const int framenumber, const int stacknumber);*/

void PrintParticleDataHeader(std::ostream &out);

void PrintParticleData(std::ostream &out, const Ipp32f particledata[][9], const int startrow, const int endrow,
                                           const int framenumber, const int stacknumber);

Ipp32f (*ParticleStatistics(Image2D &image_localmax, Image2D &image_in, const int mask_radius, 
                            const int feature_radius, int &counter))[9];
}

#endif